vcexample {vcpen} | R Documentation |
Example data for Penalized Variance Component method
Description
Datasets for an example run of vcpen with 4 variance components calculated as kernel matrices from genotype dosage (dose) on 100 subjects with two covariates (covmat), and a continuous response.
Format
The example contains three data.frames and a response vector for 100 subjects at 70 SNPs accross 4 variance components:
covmat
two arbitrary covariates (columns) for 100 subjects (rows)
dose
genotype dosage at 70 SNPs (columns) and 100 subjects (rows)
doseinfo
2-column matrix with indices for grouping SNPs into variance components (for Kernel Matrix)
response
continuous response vector for 100 subjects
Examples
data(vcexample)
dim(dose)
dim(doseinfo)
dim(covmat)
length(response)
[Package vcpen version 1.9 Index]