verify.fastq.specification {varitas}

Check that FASTQ specification data frame matches expected format, and that all files exist

Description

Check that FASTQ specification data frame matches expected format, and that all files exist

Usage

verify.fastq.specification(fastq.specification, paired.end = FALSE,
  files.ready = FALSE)

Arguments

fastq.specification

Data frame containing columns sample.id and reads, and optionally a column mates

paired.end

Logical indicating whether paired end reads are used

files.ready

Logical indicating if the files already exist on disk. If there are job dependencies, this should be set to FALSE.

Value

None