run.ides {varitas}

Run iDES

Description

Run iDES

Usage

run.ides(project.directory, sample.id.pattern = "._S\\d+$",
  sample.ids = NULL, job.dependencies = NULL)

Arguments

project.directory

Directory containing files

sample.id.pattern

Regex pattern to match sample IDs

sample.ids

Vector of sample IDs

job.dependencies

Vector of job dependencies

Details

Run iDES step 1on each sample, to tally up calls by strand. Files are output to a the sample subdirectory

Value

None

Note

Deprecated function for running iDES. Follows previous development package without specification data frames

References

https://cappseq.stanford.edu/ides/