get.varitas.options {varitas}

Return VariTAS settings

Description

Return VariTAS settings

Usage

get.varitas.options(option.name = NULL, nesting.character = "\\.")

Arguments

option.name

Optional name of option. If no name is supplied, the full list of VariTAS options will be provided.

nesting.character

String giving Regex pattern of nesting indication string. Defaults to '\.'

Value

varitas.options list specifying VariTAS options

Examples

reference.build <- get.varitas.options('reference_build');
mutect.filters <- get.varitas.options('filters.mutect');