get.miniseq.sample.files {varitas}

get.miniseq.sample.files

Description

Get files for a sample in a directory, ensuring there's only a single match per sample ID.

Usage

get.miniseq.sample.files(sample.ids, directory,
  file.suffix = "_S\\d{1,2}_.*")

Arguments

sample.ids

Vector of sample ids. Should form first part of file name

directory

Directory where files can be found

file.suffix

Regex expression for end of file name. For example, ‘file.suffix = ’_S\d1,2_.*_R1_.*'' will match R1 files.1 files.

Value

Character vector of file paths