get.coverage.by.amplicon {varitas}

Process sample coverage per amplicon data

Description

Parse coverageBed output to get coverage by amplicon

Usage

get.coverage.by.amplicon(project.directory)

Arguments

project.directory

Path to project directory. Each sample should have its own subdirectory

Value

combined.data Data frame giving coverage per amplicon per sample.

References

http://bedtools.readthedocs.io/en/latest/content/tools/coverage.html