convert.ides.output {varitas}

Convert output of iDES step 1 to variant call format

Description

Convert output of iDES step 1 to variant call format

Usage

convert.ides.output(filename, output = TRUE,
  output.suffix = ".calls.txt", minreads = 5, mindepth = 50)

Arguments

filename

Path to file

output

Logical indicating whether output should be saved to file. Defaults to true.

output.suffix

Suffix to be appended to input filename if saving results to file

minreads

Minimum numbers of reads

mindepth

Minimum depth

Value

potential.calls Data frame of converted iDES calls