build.variant.specification {varitas}

build.variant.specification

Description

Build data frame with paths to variant files.

Usage

build.variant.specification(sample.ids, project.directory)

Arguments

sample.ids

Vector of sample IDs. Must match subdirectories in project.directory.

project.directory

Path to directory where sample subdirectories

Details

Parses through sample IDs in a project directory and returns paths to variant files based on (theoretical) file name patterns. Useful for testing, or for entering the pipeline at non-traditional stages.

Value

Data frame with paths to variant files.