vs_read_vcf {variantspark} | R Documentation |
Reading a VCF file
Description
The Variant Call Format (VCF) specifies the format of a text file used in
bioinformatics for storing gene sequence variations. The format has been developed
with the advent of large-scale genotyping and DNA sequencing projects, such as
the 1000 Genomes Project. The vs_read_vcf()
reads this format and returns
a jobj
object from VCFFeatureSource
scala class.
Usage
vs_read_vcf(vsc, path)
Arguments
vsc |
A variantspark connection. |
path |
The file's path. |
Value
spark_jobj, shell_jobj
Examples
## Not run:
library(sparklyr)
sc <- spark_connect(master = "local")
vsc <- vs_context(sc)
hipster_vcf <- vs_read_vcf(vsc,
system.file("extdata/hipster.vcf.bz2",
package = "variantspark"))
hipster_vcf
## End(Not run)
[Package variantspark version 0.1.1 Index]