getFilteredData {umiAnalyzer}

Method for retrieving filtered data

Description

Method for retrieving filtered data

Usage

getFilteredData(
  object,
  name = "default",
  save = FALSE,
  outDir = getwd(),
  fileName = NULL,
  delim = ";"
)

Arguments

object

Requires a UMI sample or UMI experiment object.

name

String. Name of the filter. Default is "default".

save

Logical, should data be saved as csv file? Default is FALSE.

outDir

Output directory

fileName

Filename to be used, default is the same as 'name'

delim

Character string denoting delimiter to be used, default is ';'.

Value

A filtered consensus table, as a tibble.

Examples

library(umiAnalyzer)

main = system.file('extdata', package = 'umiAnalyzer')

samples <- list.dirs(path = main, full.names = FALSE, recursive = FALSE)

simsen <- createUmiExperiment(experimentName = 'simsen',mainDir = main,sampleNames = samples)
simsen <- filterUmiObject(simsen)

myfilter <- getFilteredData(simsen)
myfilter