UMIexperiment-class {umiAnalyzer}

UMIexperiment class

Description

The UMIexperiment is the core data object, storing all data and relevant analysis data associated with your experiment. Each object has number of slots storing raw data, graphs and processed data.

Value

An object of class UMIexperiment

Slots

name

Optional project name for record keeping.

cons.data

The raw consensus data supplied by the user.

summary.data

Summary data from UMIErrorCorrect

raw.error

Cons0 error profile

reads

Consensus reads imported using the parseBamFiles function.

meta.data

Sample data optionally supplied by the user.

filters

A list of filtered cons.data, which can be accessed separately.

plots

A list of generated plots.

variants

Consensus table generated with the umiAnalyzer variant caller.

merged.data

Data generated using the mergeTechnicalReplicates function.