run_simulation_ubiquity {ubiquity}

Simulate Individual Response

Description

Controls the execution of individual simulations with deSolve using either R scripts or loadable C libraries.

Usage

run_simulation_ubiquity(SIMINT_parameters, SIMINT_cfg, SIMINT_dropfirst = TRUE)

Arguments

SIMINT_parameters

vector of parameters

SIMINT_cfg

ubiquity system object

SIMINT_dropfirst

when TRUE it will drop the first sample point (prevents bolus doses from starting at 0)

Value

The simulation output is mapped (som) is a list. time-course is stored in the simout element.

• The first column (time) contains the simulation time in the units of the simulation.

• Next there is a column for each: State, output and system parameter

• Models with covariate will contain the initial value (prefix: SIMINT_CVIC_) as well as the values at each time point

• Each static and dynamic system parameter is also passed through

• A column for each timescale is returned with a "ts." prefix.

See Also

Simulation vignette (vignette("Simulation", package = "ubiquity"))