aggregate_cells {ttservice} | R Documentation |
Aggregate cells
Description
Combine cells into groups based on shared variables and aggregate feature counts.
Usage
aggregate_cells(
.data,
.sample = NULL,
slot = "data",
assays = NULL,
aggregation_function = Matrix::rowSums,
...
)
Arguments
.data |
A tidySingleCellExperiment object |
.sample |
A vector of variables by which cells are aggregated |
slot |
The slot to which the function is applied |
assays |
The assay to which the function is applied |
aggregation_function |
The method of cell-feature value aggregation |
... |
Used for future extendibility |
Value
A tibble object
Examples
print("pbmc_small |> aggregate_cells(c(groups, ident), assays = \"counts\")")
[Package ttservice version 0.4.1 Index]