calc_topology_stats {treestats}

Calculate all topology based statistics for a single tree

Description

this function calculates all tree statistics based on topology available in this package for a single tree, being:

• area_per_pair

• average_leaf_depth

• avg_ladder

• avg_vert_depth

• b1

• b2

• beta

• blum

• cherries

• colless

• colless_corr

• colless_quad

• diameter

• double_cherries

• eigen_centrality

• ew_colless

• four_prong

• i_stat

• il_number

• imbalance_steps

• j_one

• max_betweenness

• max_closeness

• max_del_width

• max_depth

• max_ladder

• max_width

• mw_over_md

• pitchforks

• rogers

• root_imbalance

• rquartet

• sackin

• stairs

• stairs2

• symmetry_nodes

• tot_coph

• tot_internal_path

• tot_path_length

• var_depth

Usage

calc_topology_stats(phylo, normalize = FALSE)

Arguments

phylo

phylo object

normalize

if set to TRUE, results are normalized (if possible) under either the Yule expectation (if available), or the number of tips

Value

list with statistics