calc_esses {tracerer} | R Documentation |
Calculates the Effective Sample Sizes from a parsed BEAST2 log file
Description
Calculates the Effective Sample Sizes from a parsed BEAST2 log file
Usage
calc_esses(traces, sample_interval)
Arguments
traces |
a dataframe with traces with removed burn-in |
sample_interval |
the interval in timesteps between samples |
Value
the effective sample sizes
Author(s)
Richèl J.C. Bilderbeek
Examples
# Parse an example log file
estimates <- parse_beast_tracelog_file(
get_tracerer_path("beast2_example_output.log")
)
# Calculate the effective sample sizes of all parameter estimates
calc_esses(estimates, sample_interval = 1000)
[Package tracerer version 2.2.3 Index]