CD_UKBB {topr}

UKBB Crohns disease (ICD 10 code K50)

Description

Dataset retrieved from the UK biobank consisting of 2,799 crohn´s cases (K50) and 484,515 controls. The dataset has been filtered on variants with P <1e-03.

Usage

CD_UKBB

Format

A data frame with 21,717 rows and 8 variables:

CHROM

Chromosome, written as for example chr1 or 1

POS

genetic position of the variant

REF

the reference allele

ALT

the alternative allele

ID

Variant identifier, e.g. rsid

P

P-value from Plink run, additive model, regression model GLM_FIRTH

OR

Odds Ratio

AF

Allele frequency

Source

Crohn's UKBB ICD10 code K50, only including variants with P<1e-03