| tmod-data {tmod} | R Documentation |
Default gene expression module data
Description
Gene expression module data from Chaussabel et al. (2008) and Li et al. (2014)
Details
The tmod package includes one data set of class tmod which can be loaded with data(tmod). This data set is derived from two studies (see package vignette for details). By default, enrichment analysis with tmod uses this data set; however, it is not loaded into user workspace by default.
References
Chaussabel, Damien, Charles Quinn, Jing Shen, Pinakeen Patel, Casey Glaser, Nicole Baldwin, Dorothee Stichweh, et al. 2008. "A Modular Analysis Framework for Blood Genomics Studies: Application to Systemic Lupus Erythematosus." Immunity 29(1):150-64.
Li, Shuzhao, Nadine Rouphael, Sai Duraisingham, Sandra Romero-Steiner, Scott Presnell, Carl Davis, Daniel S Schmidt, et al. 2014. "Molecular Signatures of Antibody Responses Derived from a Systems Biology Study of Five Human Vaccines." Nature Immunology 15(2):195-204.
See Also
tmod-class, modmetabo
Examples
# list of first 10 modules
data(tmod)
tmod
tmod$MODULES[1:10, ]
tmod[1:10]