modjaccard {tmod}

Jaccard index for modules

Description

Jaccard index for modules

Usage

modjaccard(mset = NULL, g = NULL)

Arguments

mset

set of modules for which to calculate the Jaccard index. If NULL, the default tmod module set will be used.

g

a list of genes. If NULL, the list of genes from the mset will be used.

Details

For each pair of modules in mset, calculate the Jacard index between these modules.

Value

matrix with Jaccard index for each pair of modules in mset