cleanSeqs {tigger} | R Documentation |
Clean up nucleotide sequences
Description
cleanSeqs
capitalizes nucleotides and replaces all characters
besides c("A", "C", "G", "T", "-", ".")
with "N"
.
Usage
cleanSeqs(seqs)
Arguments
seqs |
vector of nucleotide sequences. |
Value
A modified vector of nucleotide sequences.
See Also
sortAlleles and updateAlleleNames can help format a list of allele names.
Examples
# Clean messy nucleotide sequences
seqs <- c("AGAT.taa-GAG...ATA", "GATACAGTXXZZAGNNPPACA")
cleanSeqs(seqs)
[Package tigger version 1.1.0 Index]