SampleGenotype {tigger} | R Documentation |
Example genotype inferrence results
Description
A data.frame
of genotype inference results from inferGenotype
after novel allele detection via findNovelAlleles.
Source data was a collection of V(D)J immunoglobulin sequences derived from a single
individual (PGP1), sequenced on the Roche 454 platform, and assigned by
IMGT/HighV-QUEST to IGHV1 family alleles.
Format
A data.frame
where rows correspond to genes carried by an
individual and columns lists the alleles of those genes and their counts.
References
Gadala-Maria, et al. (2015) Automated analysis of high-throughput B cell sequencing data reveals a high frequency of novel immunoglobulin V gene segment alleles. PNAS. 112(8):E862-70.
See Also
See inferGenotype for detailed column descriptions.
[Package tigger version 1.1.0 Index]