| SampleDb {tigger} | R Documentation |
Example human immune repertoire data
Description
A data.frame of example V(D)J immunoglobulin sequences derived from a
single individual (PGP1), sequenced on the Roche 454 platform, and assigned by
IMGT/HighV-QUEST to IGHV1 family alleles.
Format
A data.frame where rows correspond to unique V(D)J sequences and
columns include:
-
"SEQUENCE_IMGT": IMGT-gapped V(D)J nucleotide sequence. -
"V_CALL": IMGT/HighV-QUEST V segment allele calls. -
"D_CALL": IMGT/HighV-QUEST D segment allele calls. -
"J_CALL": IMGT/HighV-QUEST J segment allele calls. -
"JUNCTION_LENGTH": Junction region length.
References
Gadala-Maria, et al. (2015) Automated analysis of high-throughput B cell sequencing data reveals a high frequency of novel immunoglobulin V gene segment alleles. PNAS. 112(8):E862-70.
See Also
See AIRRDb for an AIRR formatted version of SampleDb.