separate_tags {tidypmc}

Separate locus tag into multiple rows

Description

Separates locus tags mentioned in full text and expands ranges like YPO1970-74 into new rows

Usage

separate_tags(txt, pattern, column = "text")

Arguments

txt

a table

pattern

regular expression to match locus tags like YPO[0-9-]+ or the locus tag prefix like YPO.

column

column name to search, default "text"

Value

a tibble with locus tag, matching text and rows.

Author(s)

Chris Stubben

Examples

x <- data.frame(row = 1, text = "some genes like YPO1002 and YPO1970-74")
separate_tags(x, "YPO")