data_exprs {tidyheatmaps}

Expression data from RNA-Seq study

Description

This data was taken form a RNA-Seq study investigating the regulation of genes in response to central nervous system inflammation.

Usage

data_exprs

Format

A data frame with 800 rows and 9 variables:

ensembl_gene_id

Ensembl gene id

external_gene_name

Gene symbol

sample

Sample name

expression

Normalized RNA-Seq expression value

group

Experimental group

sample_type

Sample type. Either input or IP.

condition

Condition of sampling. Either healthy or EAE.

is_immune_gene

Gene is annotated as immune cell gene. Either yes or no.

direction

Direction of regulation. Either up or down.

Source

data_exprs represents just a small subset of the data aquired in the study.

More details about the study can be found here

• Nature Neuroscience, Bassoon proteinopathy drives neurodegeneration in multiple sclerosis

The complete raw data can be downloaded here

• Gene Expression Omnibus, study accession GSE104899