input_heatmap {tidyHeatmap}

input_heatmap

Description

input_heatmap() takes a tbl object and easily produces a ComplexHeatmap plot, with integration with tibble and dplyr frameworks.

Usage

input_heatmap(
  .data,
  .horizontal,
  .vertical,
  .abundance,
  transform = NULL,
  scale = "none",
  palette_value = c("#440154FF", "#21908CFF", "#fefada"),
  palette_grouping = list(),
  ...
)

Arguments

.data

A 'tbl' formatted as | <SAMPLE> | <TRANSCRIPT> | <COUNT> | <...> |

.horizontal

The name of the column horizontally presented in the heatmap

.vertical

The name of the column vertically presented in the heatmap

.abundance

The name of the transcript/gene abundance column

transform

A function, used to transform .value, for example log1p

scale

A character string. Possible values are c(\"none\", \"row\", \"column\", \"both\")

palette_value

A character vector, or a function for higher customisation (colorRamp2). This is the palette that will be used as gradient for abundance. If palette_value is a vector of hexadecimal colours, it should have 3 values. If you want more customisation, you can pass to palette_value a function, that is derived as for example 'colorRamp2(c(-2, 0, 2), palette_value)'

palette_grouping

A list of character vectors. This is the list of palettes that will be used for grouping

...

Further arguments to be passed to ComplexHeatmap::Heatmap

Details

To be added.

Value

A 'ComplexHeatmap' object