lambda_check_source {tidyDenovix}

Title: Wavelength quality control

Description

Title: Wavelength quality control

Usage

lambda_check_source(
  odf,
  sample_type = c("RNA", "DNA"),
  check_level = c("strict", "lax")
)

Arguments

odf

A data frame with quality attributes.

sample_type

The type of sample under investigation.

check_level

The level of strictness based on sample type.

Value

A vector of sample names for the different QC criteria.

Note

Some key assumptions are made about quality for RNA or DNA. At the moment column names is the main issue found with using this approach.

Author(s)

Tingwei Adeck

Examples

fpath <- system.file("extdata", "rnaspec2018.csv", package = "tidyDenovix", mustWork = TRUE)
rna_data = read_denovix_data(fpath, file_type = 'csv')
qc_check = lambda_check_source(rna_data,sample_type='RNA',check_level='lax')