lambda_check {tidyDenovix}

Title: Wavelength quality control

Description

Title: Wavelength quality control

Usage

lambda_check(
  qdf,
  sample_type = c("RNA", "DNA"),
  check_level = c("strict", "lax")
)

Arguments

qdf

A data frame with quality attributes.

sample_type

The type of sample under investigation.

check_level

The level of strictness based on sample type.

Value

A data frame that meets the quality check criteria.

Note

Some key assumptions are made about quality for RNA or DNA. At the moment column names is the main issue found with using this approach.

Author(s)

Tingwei Adeck

Examples

fpath <- system.file("extdata", "rnaspec2018.csv", package = "tidyDenovix", mustWork = TRUE)
rna_data = read_denovix_data(fpath, file_type = 'csv')
qc_check = lambda_check(rna_data,sample_type='RNA',check_level='lax')