tax_name.taxa_classification {taxa}

Set and get taxon names

Description

Set and get the taxon names in objects that have them, such as taxon objects. Note that this is not the same as adding vector names with names.

Usage

## S3 method for class 'taxa_classification'
tax_name(x)

## S3 replacement method for class 'taxa_classification'
tax_name(x) <- value

tax_name(x)

tax_name(x) <- value

## S3 method for class 'taxa_taxon'
tax_name(x)

## S3 replacement method for class 'taxa_taxon'
tax_name(x) <- value

## S3 method for class 'taxa_taxonomy'
tax_name(x)

## S3 replacement method for class 'taxa_taxonomy'
tax_name(x) <- value

Arguments

x

An object with taxon names.

value

The taxon names to set. Inputs will be coerced into a character vector.

Examples

x <- taxon(name = c('Homo sapiens', 'Bacillus', 'Ascomycota', 'Ericaceae'),
           rank = c('species', 'genus', 'phylum', 'family'),
           id = taxon_id(c('9606', '1386', '4890', '4345'), db = 'ncbi'),
           auth = c('Linnaeus, 1758', 'Cohn 1872', NA, 'Juss., 1789'))

tax_name(x)
tax_name(x) <- tolower(tax_name(x))
tax_name(x)[1] <- 'Billy'