| gambia {tagcloud} | R Documentation |
Results of GO enrichment analysis in TB
Description
A data.frame object containing the results of a GO enrichment analysis from the GOstats package.
Format
A data frame with 318 observations on the following 9 variables.
GOBPID Pvalue OddsRatio ExpCount Count Size Term
- GOBPID
Gene Ontology (GO) biological process (BP) identifier
- Pvalue
P value from enrichment test
- OddsRatio
Measure of enrichment
- ExpCount
expected number of genes in the enriched partition which map to this GO term
- Count
number of genes in the enriched partition which map to this GO term
- Size
number of genes within this GO Term
- Term
Gene Ontology term description
Details
The data results from a microarray analysis of the whole blood transcriptome of tuberculosis (TB) patients compared to healthy individuals. Genes were sorted by their p-value and analysed using the GOstats package.
Significantly enriched GO terms are included in this data frame.
Source
Maertzdorf J., Ota M., Repsilber D., Mollenkopf H.J., Weiner J., et al. (2011) Functional Correlations of Pathogenesis-Driven Gene Expression Signatures in Tuberculosis. PLoS ONE 6(10): e26938. doi:10.1371/journal.pone.0026938
Examples
data(gambia)
tagcloud( gambia$Term, -log( gambia$Pvalue ) )