| runPCAQueryAlone {symphony} | R Documentation |
Runs a standard PCA pipeline on query (1 batch). Assumes query_exp is already normalized.
Description
Runs a standard PCA pipeline on query (1 batch). Assumes query_exp is already normalized.
Usage
runPCAQueryAlone(query_exp, topn = 2000, d = 20, seed = 1)
Arguments
query_exp |
Query expression matrix (genes x cells) |
topn |
Number of variable genes to use |
d |
Number of dimensions |
seed |
random seed |
Value
A matrix of PCs by cells
[Package symphony version 0.1.1 Index]