runPCAQueryAlone {symphony}R Documentation

Runs a standard PCA pipeline on query (1 batch). Assumes query_exp is already normalized.

Description

Runs a standard PCA pipeline on query (1 batch). Assumes query_exp is already normalized.

Usage

runPCAQueryAlone(query_exp, topn = 2000, d = 20, seed = 1)

Arguments

query_exp

Query expression matrix (genes x cells)

topn

Number of variable genes to use

d

Number of dimensions

seed

random seed

Value

A matrix of PCs by cells


[Package symphony version 0.1.1 Index]