swimmer_points {swimplot}

Adding points to a swimmers plot

Description

This function allows you to add points to a swimmers plot created with swimmer_plot

Usage

swimmer_points(
  df_points,
  id = "id",
  time = "time",
  adj.y = 0,
  name_shape = NULL,
  name_col = NULL,
  name_size = NULL,
  name_fill = NULL,
  name_stroke = NULL,
  name_alpha = NULL,
  ...
)

Arguments

df_points

a data frame

id

column name for id, default is 'id'

time

column name with the point locations

adj.y

amount to adjust the point within the box vertically (default is 0, point is in the centre of each bar)

name_shape

a column name to map the point shape

name_col

a column name to map the point colour

name_size

a column name to map the point size

name_fill

a column name to map the point fill

name_stroke

a column name to map the point stroke

name_alpha

a column name to map the point transparency

...

additional geom_point() arguments

Value

a swimmer plot with points

See Also

swimmer_plot swimmer_lines swimmer_lines swimmer_points_from_lines swimmer_arrows swimmer_text

Examples

#Start with a base swimmer plot

swim_plot <-
 swimmer_plot(df=ClinicalTrial.Arm,id='id',end='End_trt',name_fill='Arm',col="black",id_order='Arm')


# Then add points to the plot

swim_plot_with_points <- swim_plot + swimmer_points(df_points=
ClinicalTrial.AE,id='id',time='time',name_shape =
'event',size=3,fill='white',col='black')



# Add ggplot layers to improve the plot's aesthetic

swim_plot_with_points + ggplot2::scale_shape_manual(name="Adverse
event",values=c(21,24,17),breaks=c('AE','SAE','Death'))+
ggplot2::scale_fill_manual(name="Treatment",values=c("#e41a1c", "#377eb8","#4daf4a"))+
ggplot2::ylab('Time (Days)')



##Another example with the colour and shape mapped to different columns

#Start with a base swimmer plot

swim_plot <-
 swimmer_plot(df=ClinicalTrial.Arm,id='id',end='End_trt',name_fill='Arm',col="black",id_order='Arm')


swim_plot +
 swimmer_points(df_points=ClinicalTrial.AE,id='id',time='time',name_shape =
                 'event',fill='white',name_col = 'Related',size=5)+
 ggplot2::scale_shape_manual(name="Adverse event",values=c(16,17,18),breaks=c('AE','SAE','Death'))+
 ggplot2::scale_fill_manual(name="Treatment",values=c("#e41a1c", "#377eb8","#4daf4a"))+
 ggplot2::ylab('Time (Days)') +
 ggplot2::scale_color_manual(name="Likelihood related to treatment",values=c(1,'grey52','grey90'))