cox_as_data_frame {survivalAnalysis}

Turns a coxph result to a data frame

Description

Extracts useful information from a coxph/summary.coxph into a data frame which is ready for printing or further analysis

Usage

cox_as_data_frame(
  coxphsummary,
  unmangle_dict = NULL,
  factor_id_sep = ":",
  sort_by = NULL
)

Arguments

coxphsummary

The summary.coxph or coxph result object

unmangle_dict

An unmangle dict of mangled column name -> readable column name (as created by analyse_multivariate)

factor_id_sep

The frame contains one column "factor.id" which is a composite of covariate name and, if categorical, the factor level (one line for each factor level except for the reference level)

sort_by

A vars() list of one or more symbolic column names. This frame contains the variables "Lower_CI", "HR", "Upper_CI", "Inv_Lower_CI", "Inv_HR", "Inv_Upper_CI", "p". You can choose to sort by any combination. Use desc() to sort a variable in descending order.

Value

A tibble.