sign.change {supclust} | R Documentation |
Sign-flipping of Predictor Variables to Obtain Equal Polarity
Description
Computes the empirical correlation for each predictor
variable (gene) in the x
-Matrix with the response y
, and
multiplies its values with (-1) if the empirical correlation has a
negative sign. For gene expression data, this amounts to treating
under- and overexpression symmetrically. After the sign.change
,
low (expression) values point towards response class 0 and high
(expression) values point towards class 1.
Usage
sign.change(x, y)
Arguments
x |
Numeric matrix of explanatory variables ( |
y |
Numeric vector of length |
Value
Returns a list containing:
x.new |
The sign-flipped |
signs |
Numeric vector of length |
Author(s)
Marcel Dettling, dettling@stat.math.ethz.ch
See Also
pelora
also for references,
as well as for older methodology,
wilma
and sign.flip
.
Examples
data(leukemia, package="supclust")
op <- par(mfrow=c(1,3))
plot(leukemia.x[,69],leukemia.y)
title(paste("Margin = ", round(margin(leukemia.x[,69], leukemia.y),2)))
## Sign-flipping is very important
plot(leukemia.x[,161],leukemia.y)
title(paste("Margin = ", round(margin(leukemia.x[,161], leukemia.y),2)))
x <- sign.change(leukemia.x, leukemia.y)$x.new
plot(x[,161],leukemia.y)
title(paste("Margin = ", round(margin(x[,161], leukemia.y),2)))
par(op)