sumStrains {stagePop}

sumStrains

Description

sumStrains

Usage

sumStrains(
  namedOutput,
  numSpecies,
  numStages,
  numStrains,
  speciesNames,
  stageNames,
  timeDependLoss,
  timeDependDuration
)

Arguments

namedOutput

The output martix from popModel

numSpecies

Number of species (integer)

numStages

Number of life-stages in each species (vector)

numStrains

Number of strains in each species (vector)

speciesNames

A vector of strings containing the name for each species. This is only used for plotting purposes.

stageNames

A list of n vectors (where n is the number of species) containing the names of each stage for each species.

timeDependLoss

A vector specifying TRUE/FALSE for each species. If a species has any time dependent per capita death rates (e.g. density dependent death rates) this is TRUE.

timeDependDuration

A vector specifying TRUE/FALSE for each species. If a species has any time dependent stage durations it is TRUE for that species.