choice_c,report_silver_eel-method {stacomiR}

command line interface for report_silver_eel class

Description

#' The choice_c method fills in the data slot for classes ref_dc-class, ref_taxa-class, ref_stage-class, ref_par-class and two slots of ref_horodate-class and then uses the choice_c methods of these object to select the data.

Usage

## S4 method for signature 'report_silver_eel'
choice_c(
  object,
  dc,
  taxa = 2038,
  stage = "AGG",
  par = c("1786", "CCCC", "BBBB", "CONT", "LINP", "A111", "PECT"),
  horodatedebut,
  horodatefin,
  silent = FALSE
)

Arguments

object

An object of class report_silver_eel-class

dc

A numeric or integer, the code of the dc, coerced to integer,see choice_c,ref_dc-method

taxa

'2038=Anguilla anguilla', these should match the ref.tr_taxon_tax referential table in the stacomi database, see choice_c,ref_taxa-method

stage

'AGG'

par

Parameters chosen for the report are body size (1786), vertical eye diameter (BBBB), horizontal eye diameter (CCCC), body contrast (CONT), presence of punctuation on the lateral line (LINP), length of the pectoral fin (PECT)

horodatedebut

The starting date as a character, formats like %Y-%m-%d or %d-%m-%Y can be used as input

horodatefin

The finishing date of the report, for this class this will be used to calculate the number of daily steps.

silent

Boolean, if TRUE, information messages are not displayed

Value

An object of class report_mig-class

Author(s)

Cedric Briand [e-mail]