eempf_openfluor {staRdom}

Write out PARAFAC components to submit to openfluor.org.

Description

openfluor.org offers the possibility to compare your results to others, that were uploaded to the database. This functions writes out a txt containing the header lines and your components. Please open the file in an editor and fill in further information that cannot be covered by this function.

Usage

eempf_openfluor(
  pfmodel,
  file,
  Fmax = TRUE,
  upload = FALSE,
  email = NULL,
  model_details = list()
)

Arguments

pfmodel

PARAFAC model

file

string, path to outputfile. The directory must exist, the file will be created or overwritten if already present.

Fmax

rescale modes so the A mode shows the maximum fluorescence. As openfluor does not accept values above 1, this is a way of scaling the B and C modes to a range between 0 and 1.

upload

logical, whether model is directly uploaded to openfluor.org

email

optional email address to log into openfluor.org

model_details

optional named list with strings to be added in the openfluor file in the fields corresponding to the list names

Value

txt file

Examples

  data(pf_models)

  model_details <- list(name = "River", creator = "Helena Glory",
  constraints = "non-negative", validation = "split-half", unit= "RU")
  eempf_openfluor(pf4[[1]],file.path(tempdir(),"openfluor_example.txt"),
  upload = FALSE, model_details = model_details)