eem_read_csv {staRdom}

Import EEMs from generic csv tables (deprecated)

Description

This function is deprecate, please use eem_read(..., import_function = eem_csv) or eem_read(..., import_function = eem_csv2) instead. EEM data is loaded from generic files. First column and first row contains wavelength values. The other values are to be plain numbers. fread is used to read the table. It offers a lot of helpful functions (e.g. skipping any number n of header lines by adding 'skip = n')

Usage

eem_read_csv(
  path,
  col = "ex",
  recursive = TRUE,
  is_blank_corrected = FALSE,
  is_scatter_corrected = FALSE,
  is_ife_corrected = FALSE,
  is_raman_normalized = FALSE,
  manufacturer = "unknown",
  ...
)

Arguments

path

path to file(s), either a filename or a folder

col

either "ex" or "em", what wavelengths are in the columns

recursive

logical, whether directories are loaded recursively

is_blank_corrected

logical, whether blank correction was done

is_scatter_corrected

logical, wether scatters were corrected

is_ife_corrected

logical, wether inner-filter effect correction was done

is_raman_normalized

logical, wether raman normalisation applied

manufacturer

string specifying manufacturer of instrument

...

parameters from other functions, currently not used

Examples

eems <- system.file("extdata/EEMs",package="staRdom")
eem_list <- eem_read_csv(eems)

eem_list