rmChangePoint {sssc}

Remove CNV regions within VCF files by changepoint method

Description

Remove CNV regions within VCF files by changepoint method

Usage

rmChangePoint(vcf, threshold, skew, lower, upper)

Arguments

vcf

Input VCF files

threshold

Threshold for allele frequency

skew

Skewness for allele frequency

lower

Lower bound for allele frequency region

upper

Upper bound for allele frequency region

Value

VCF object without changepoint region