getAvgLL {sssc}

Calculate average log-likelihood

Description

Calculate average log-likelihood

Usage

getAvgLL(df, hom_mle, het_mle, hom_rho, het_rho)

Arguments

df

Input modified file

hom_mle

Hom MLE of p in Beta-Binomial model, default is 0.9981416 from NA12878_1_L5

het_mle

Het MLE of p in Beta-Binomial model, default is 0.4737897 from NA12878_1_L5

hom_rho

Hom MLE of rho in Beta-Binomial model, default is 0.04570275 from NA12878_1_L5

het_rho

Het MLE of rho in Beta-Binomial model, default is 0.02224098 from NA12878_1_L5

Value

meanLL