config_df {sssc} | R Documentation |
Default parameters of config.
Description
A dataframe containing default parameters.
Usage
config_df
Format
A data frame with 12 variables:
threshold
Threshold for allele frequency
skew
Skewness for allele frequency
lower
Lower bound for allele frequency region
upper
Upper bound for allele frequency region
ldpthred
Threshold to determine low depth
hom_mle
Hom MLE of p in Beta-Binomial model
het_mle
Het MLE of p in Beta-Binomial model
Hom_thred
Threshold between hom and high
High_thred
Threshold between high and het
Het_thred
Threshold between het and low
hom_rho
Hom MLE of rho in Beta-Binomial model
het_rho
Het MLE of rho in Beta-Binomial model
Source
Created by Tao Jiang
[Package sssc version 1.0.0 Index]