spiral_phylo {spiralize} | R Documentation |
Draw phylogenetic tree
Description
Draw phylogenetic tree
Usage
spiral_phylo(obj, gp = gpar(), log = FALSE, reverse = FALSE,
group = NULL, group_col = NULL, track_index = current_track_index())
Arguments
obj |
A |
gp |
Graphics parameters of the tree edges. |
log |
Whether the height of the tree should be log-transformed (log10(x + 1))? |
reverse |
Whether the tree should be reversed? |
group |
A categorical variable for splitting the tree. |
group_col |
A named vector which contains group colors. |
track_index |
Index of the track. |
Value
Height of the phylogenetic tree.
Examples
require(ape)
data(bird.families)
n = length(bird.families$tip.label)
spiral_initialize(xlim = c(0, n), start = 360, end = 360*3)
spiral_track(height = 0.8)
spiral_phylo(bird.families)
[Package spiralize version 1.0.6 Index]