plot_slice_map_inter {spant}

Plot an interactive slice map from a data array where voxels can be selected to display a corresponding spectrum.

Description

Plot an interactive slice map from a data array where voxels can be selected to display a corresponding spectrum.

Usage

plot_slice_map_inter(
  mrs_data,
  map = NULL,
  xlim = NULL,
  slice = 1,
  zlim = NULL,
  mask_map = NULL,
  denom = NULL,
  mask_cutoff = 20,
  interp = 1,
  mode = "re",
  y_scale = FALSE,
  ylim = NULL,
  coil = 1,
  fd = TRUE
)

Arguments

mrs_data

spectral data.

map

array of values to be plotted, defaults to the integration of the modulus of the full spectral width.

xlim

spectral region to plot.

slice

the slice index to plot.

zlim

smallest and largest values to be plotted.

mask_map

matching map with logical values to indicate if the corresponding values should be plotted.

denom

map to use as a denominator.

mask_cutoff

minimum values to plot (as a percentage of the maximum).

interp

map interpolation factor.

mode

representation of the complex spectrum to be plotted, can be one of: "re", "im", "mod" or "arg".

y_scale

option to display the y-axis values (logical).

ylim

intensity range to plot.

coil

coil element to plot.

fd

display data in the frequency-domain (default), or time-domain (logical).