summary.spPGOcc {spOccupancy}

Methods for spPGOcc Object

Description

Methods for extracting information from fitted single-species spatial occupancy (spPGOcc) model.

Usage

## S3 method for class 'spPGOcc'
summary(object, quantiles = c(0.025, 0.5, 0.975), 
        digits = max(3L, getOption("digits") - 3L), ...)
## S3 method for class 'spPGOcc'
print(x, ...)
## S3 method for class 'spPGOcc'
plot(x, param, density = TRUE, ...)

Arguments

object, x

object of class spPGOcc.

quantiles

for summary, posterior distribution quantiles to compute.

digits

for summary, number of digits to report.

param

parameter name for which to generate a traceplot. Valid names are "beta", "beta.star", "sigma.sq.psi", "alpha", "alpha.star", "sigma.sq.p", "theta".

density

logical value indicating whether to also generate a density plot for each parameter in addition to the MCMC traceplot.

...

currently no additional arguments

Details

A set of standard extractor functions for fitted model objects of class spPGOcc, including methods to the generic functions print, summary, and plot.

Value

No return value, called to display summary information of a spPGOcc object.