fitted.lfJSDM {spOccupancy}

Extract Model Fitted Values for lfJSDM Object

Description

Method for extracting model fitted values and probability values from a fitted latent factor joint species distribution model (lfJSDM).

Usage

## S3 method for class 'lfJSDM'
fitted(object, ...)

Arguments

object

object of class lfJSDM.

...

currently no additional arguments

Details

A method to the generic fitted function to extract fitted values and probability values for fitted model objects of class lfJSDM.

Value

A list comprised of:

z.samples

A three-dimensional numeric array of fitted values for use in Goodness of Fit assessments. Array dimensions correspond to MCMC samples, species, and sites.

psi.samples

A three-dimensional numeric array of probability values. Array dimensions correspond to MCMC samples, species, and sites.