fitted.msNMix {spAbundance}

Extract Model Fitted Values for msNMix Object

Description

Method for extracting model fitted values and detection probability values from a fitted multi-species N-mixture (msNMix) model.

Usage

## S3 method for class 'msNMix'
fitted(object, type = 'marginal', ...)

Arguments

object

object of class msNMix.

type

a character string indicating whether fitted values should be generated conditional on the estimated latent abundance values (type = 'conditional') estimated during the model or based on the marginal expected abundance values (type = 'marginal').

...

currently no additional arguments

Details

A method to the generic fitted function to extract fitted values and detection probability values for fitted model objects of class msNMix.

Value

A list comprised of:

y.rep.samples

A four-dimensional numeric array of fitted values for use in Goodness of Fit assessments. Array dimensions correspond to MCMC samples, species, sites, and replicates.

p.samples

A four-dimensional numeric array of detection probability values. Array dimensions correspond to MCMC samples, species, sites, and replicates.