ts_recapitate {slendr} | R Documentation |
Recapitate the tree sequence
Description
Recapitate the tree sequence
Usage
ts_recapitate(
ts,
recombination_rate,
Ne = NULL,
demography = NULL,
random_seed = NULL
)
Arguments
ts |
Tree sequence object loaded by |
recombination_rate |
A constant value of the recombination rate |
Ne |
Effective population size during the recapitation process |
demography |
Ancestral demography to be passed internally to
|
random_seed |
Random seed passed to pyslim's |
Value
Tree-sequence object of the class slendr_ts
, which serves as
an interface point for the Python module tskit using slendr functions with
the ts_
prefix.
See Also
ts_nodes
for extracting useful information about
individuals, nodes, coalescent times and geospatial locations of nodes on a
map
Examples
init_env()
# load an example model with an already simulated tree sequence
slendr_ts <- system.file("extdata/models/introgression_slim.trees", package = "slendr")
model <- read_model(path = system.file("extdata/models/introgression", package = "slendr"))
ts <- ts_load(slendr_ts, model) %>%
ts_recapitate(recombination_rate = 1e-8, Ne = 10000, random_seed = 42)
ts
[Package slendr version 0.9.1 Index]