get_log_p_D_KL {singleCellHaystack}

Estimates the significance of the observed Kullback-Leibler divergence by comparing to randomizations.

Description

Estimates the significance of the observed Kullback-Leibler divergence by comparing to randomizations.

Usage

get_log_p_D_KL(T.counts, D_KL.observed, D_KL.randomized, output.dir = NULL)

Arguments

T.counts

The number of cells in which a gene is detected.

D_KL.observed

A vector of observed Kullback-Leibler divergences.

D_KL.randomized

A matrix of Kullback-Leibler divergences of randomized datasets.

output.dir

Optional parameter. Default is NULL. If not NULL, some files will be written to this directory.

Value

A vector of log10 p values, not corrected for multiple testing using the Bonferroni correction.