simer.Data.SELIND {simer} | R Documentation |
Selection index construction
Description
The function of General Selection Index.
Usage
simer.Data.SELIND(jsonList = NULL, hiblupPath = "", ncpus = 10, verbose = TRUE)
Arguments
jsonList |
the list of selection index construction parameters. |
hiblupPath |
the path of HIBLUP software. |
ncpus |
the number of threads used, if NULL, (logical core number - 1) is automatically used. |
verbose |
whether to print detail. |
Details
Build date: Aug 26, 2021 Last update: Apr 28, 2022
Value
the function returns a list containing
- $genotype
the path of genotype data.
- $pedigree
the filename of pedigree data.
- $selection_index
the selection index for all traits.
- $breeding_value_index
the breeding value index for all traits.
- $quality_control_plan
a list of parameters for data quality control.
- $breeding_plan
a list of parameters for genetic evaluation.
Author(s)
Dong Yin
References
Y. S. Chen, Z. L. Sheng (1988) The Theory of General Selection Index. Genetic Report, 15(3): P185-P190
Examples
# Read JSON file
jsonFile <- system.file("extdata", "04breeding_plan", "plan1.json", package = "simer")
jsonList <- jsonlite::fromJSON(txt = jsonFile, simplifyVector = FALSE)
## Not run:
# It needs 'hiblup' software
jsonList <- simer.Data.SELIND(jsonList = jsonList)
## End(Not run)
[Package simer version 0.9.0.4 Index]