simer.Data.MVP2Bfile {simer}

simer.Data.MVP2Bfile: To transform MVP data to binary format

Description

transforming MVP data to binary format.

Usage

simer.Data.MVP2Bfile(
  bigmat,
  map,
  pheno = NULL,
  out = "simer",
  threads = 10,
  verbose = TRUE
)

Arguments

bigmat

Genotype in bigmatrix format (0,1,2).

map

the map file.

pheno

the phenotype file.

out

the name of output file.

threads

the number of threads used, if NULL, (logical core number - 1) is automatically used.

verbose

whether to print the reminder.

Details

Build date: Sep 12, 2018 Last update: July 20, 2022

Value

NULL Output files: .bed, .bim, .fam

Author(s)

Haohao Zhang and Dong Yin

Examples

# Generate bigmat and map
bigmat <- as.big.matrix(matrix(1:6, 3, 2))
map <- generate.map(pop.marker = 3)

# Data converting
simer.Data.MVP2Bfile(bigmat, map, out=tempfile("outfile"))