getCMfromBP {sim1000G}

Converts centimorgan position to base-pair. Return a list of centimorgan positions that correspond to the bp vector (in basepairs).

Description

Converts centimorgan position to base-pair. Return a list of centimorgan positions that correspond to the bp vector (in basepairs).

Usage

getCMfromBP(bp)

Arguments

bp

vector of base-pair positions

Examples

library("sim1000G")

examples_dir = system.file("examples", package = "sim1000G")
vcf_file = sprintf("%s/region.vcf.gz", examples_dir)
vcf = readVCF( vcf_file, maxNumberOfVariants = 100,
  min_maf = 0.12)

# For realistic data use the function downloadGeneticMap
generateUniformGeneticMap()
getCMfromBP(seq(1e6,100e6,by=1e6))