generateSingleRecombinationVector {sim1000G}

Genetates a recombination vector arising from one meiotic event. The origin of segments is coded as (0 - haplotype1 , 1 - haplotype2 )

Description

Genetates a recombination vector arising from one meiotic event. The origin of segments is coded as (0 - haplotype1 , 1 - haplotype2 )

Usage

generateSingleRecombinationVector(cm)

Arguments

cm

The length of the region that we want to generate recombination distances.

Examples

library("sim1000G")

examples_dir = system.file("examples", package = "sim1000G")
vcf_file = file.path(examples_dir, "region.vcf.gz")
vcf = readVCF( vcf_file, maxNumberOfVariants = 100 ,
               min_maf = 0.12 ,max_maf = NA)

# For realistic data use the function downloadGeneticMap
generateUniformGeneticMap()
generateSingleRecombinationVector( 1:100 )